ONTOLOGY SOURCE REFERENCE
Term Source Name	PATO	OBI	NCBITAXON
Term Source File	http://data.bioontology.org/ontologies/PATO	http://data.bioontology.org/ontologies/OBI	http://data.bioontology.org/ontologies/NCBITAXON
Term Source Version	1.2	31	8
Term Source Description	Phenotype And Trait Ontology	Ontology for Biomedical Investigations	National Center for Biotechnology Information (NCBI) Organismal Classification
INVESTIGATION
Investigation Identifier	""
Investigation Title	{{cookiecutter.investigation_title}}
Investigation Description	""
Investigation Submission Date	""
Investigation Public Release Date	""
Comment[Created With Configuration]	""
Comment[Last Opened With Configuration]	""
INVESTIGATION PUBLICATIONS
Investigation PubMed ID	
Investigation Publication DOI	
Investigation Publication Author List	
Investigation Publication Title	
Investigation Publication Status	
Investigation Publication Status Term Accession Number	
Investigation Publication Status Term Source REF	
INVESTIGATION CONTACTS
Investigation Person Last Name	
Investigation Person First Name	
Investigation Person Mid Initials	
Investigation Person Email	
Investigation Person Phone	
Investigation Person Fax	
Investigation Person Address	
Investigation Person Affiliation	
Investigation Person Roles	
Investigation Person Roles Term Accession Number	
Investigation Person Roles Term Source REF	
STUDY
Study Identifier	{{cookiecutter.s_file_name}}
Study Title	{{cookiecutter.investigation_title}}
Study Description	""
Comment[Study Grant Number]	""
Comment[Study Funding Agency]	""
Study Submission Date	""
Study Public Release Date	""
Study File Name	s_{{cookiecutter.s_file_name}}.txt
STUDY DESIGN DESCRIPTORS
Study Design Type	""
Study Design Type Term Accession Number	""
Study Design Type Term Source REF	""
STUDY PUBLICATIONS
Study PubMed ID	
Study Publication DOI	
Study Publication Author List	
Study Publication Title	
Study Publication Status	
Study Publication Status Term Accession Number	
Study Publication Status Term Source REF	
STUDY FACTORS
Study Factor Name	""
Study Factor Type	""
Study Factor Type Term Accession Number	""
Study Factor Type Term Source REF	""
STUDY ASSAYS
Study Assay File Name	a_{{cookiecutter.assay_prefix}}_{{cookiecutter.assay_name}}.txt
Study Assay Measurement Type	{{cookiecutter.a_measurement_type}}
Study Assay Measurement Type Term Accession Number	{{cookiecutter._terms[cookiecutter.a_measurement_type].accession_number}}
Study Assay Measurement Type Term Source REF	{{cookiecutter._terms[cookiecutter.a_measurement_type].source_ref}}
Study Assay Technology Type	{{cookiecutter.a_technology_type}}
Study Assay Technology Type Term Accession Number	{{cookiecutter._terms[cookiecutter.a_technology_type].accession_number}}
Study Assay Technology Type Term Source REF	{{cookiecutter._terms[cookiecutter.a_technology_type].source_ref}}
Study Assay Technology Platform	{{cookiecutter.technology_platform}}
STUDY PROTOCOLS
Study Protocol Name	Sample collection	Nucleic acid extraction	Labeling	Nucleic acid hybridization	Data collection	Normalization data transformation	Data transformation
Study Protocol Type	sample collection	nucleic acid extraction	Labeling	nucleic acid hybridization	data collection	normalization data transformation	data transformation
Study Protocol Type Term Accession Number		http://purl.obolibrary.org/obo/OBI_0666667		http://purl.obolibrary.org/obo/OBI_0302903			
Study Protocol Type Term Source REF		OBI		OBI			
Study Protocol Description	""	""	""	""	""	""	""
Study Protocol URI	""	""	""	""	""	""	""
Study Protocol Version	""	""	""	""	""	""	""
Study Protocol Parameters Name	""	""	""	""	""	""	""
Study Protocol Parameters Name Term Accession Number	""	""	""	""	""	""	""
Study Protocol Parameters Name Term Source REF	""	""	""	""	""	""	""
Study Protocol Components Name	""	""	""	""	""	""	""
Study Protocol Components Type	""	""	""	""	""	""	""
Study Protocol Components Type Term Accession Number	""	""	""	""	""	""	""
Study Protocol Components Type Term Source REF	""	""	""	""	""	""	""
STUDY CONTACTS
Study Person Last Name	
Study Person First Name	
Study Person Mid Initials	
Study Person Email	
Study Person Phone	
Study Person Fax	
Study Person Address	
Study Person Affiliation	
Study Person Roles	
Study Person Roles Term Accession Number	
Study Person Roles Term Source REF	
